rs10515746
Variant in the HAVCR2 gene (Hepatitis A Virus Cellular Receptor 2 (TIM-3))
rs10515746 is a single nucleotide polymorphism (SNP) in the HAVCR2 gene, involved in T cell exhaustion / innate immune regulation. Variants at this position have been studied in relation to immune function, metabolism, and chronic illness.
This page is for educational and informational purposes only. Not a diagnostic tool. Always consult a qualified healthcare provider.
What is the rs10515746 variant?
rs10515746 is a SNP (single nucleotide polymorphism) in the HAVCR2 (Hepatitis A Virus Cellular Receptor 2 (TIM-3)) gene. It belongs to the Immune Signaling category and is part of the Immune System & Inflammation biological cluster. HAVCR2 encodes TIM-3, an immune checkpoint receptor on exhausted T cells and innate immune cells that promotes T cell dysfunction.
Biological role and pathway
This variant sits within the HAVCR2 gene, which is involved in the T cell exhaustion / innate immune regulation pathway. Genes within the Immune System & Inflammation cluster work together to maintain balanced function across interconnected biological systems.
Variants in genes within this pathway may influence an individual's predisposition to altered function — particularly under conditions of physiological stress such as viral infection or prolonged illness.
rs10515746 and Long COVID / ME-CFS research
TIM-3 is co-expressed with PD-1 on exhausted T cells in COVID-19; variants may affect T cell exhaustion depth and the persistence of immune dysfunction in Long COVID.
This information is based on published research and does not constitute medical advice. See references below.
Parent gene: HAVCR2
rs10515746 is one of 2 known variants in the HAVCR2 gene. To understand the full biological context of this variant, explore the parent gene page.
View HAVCR2 gene page →Conditions studied in relation to rs10515746
Research into HAVCR2 variants including rs10515746 has explored associations with the following conditions. These are areas of scientific investigation and do not imply causation.
Genetic insights from DNA data
Consumer DNA files from 23andMe, AncestryDNA, and MyHeritage contain raw SNP data. When you upload your file to ChronicDNA, the analysis engine checks your genotype against a curated panel of 80+ genes selected for their relevance to Long COVID, ME/CFS, and connected biological pathways - some of which may include HAVCR2 and the rs10515746 variant.
The report is educational - it explains which variants you carry, what the research says about them, and how they fit into the biological pathways most relevant to chronic illness. Results are presented in plain English with appropriate scientific context, no medical jargon, no scare tactics. All results should be discussed with a qualified healthcare provider.
Other variants in the HAVCR2 gene
The following variants in HAVCR2 are also studied in relation to chronic illness and may be analysed together for a more complete picture.
Frequently asked questions
What is the rs10515746 variant in the HAVCR2 gene?
rs10515746 is a single nucleotide polymorphism (SNP) located in the HAVCR2 (Hepatitis A Virus Cellular Receptor 2 (TIM-3)) gene, which is involved in T cell exhaustion / innate immune regulation. HAVCR2 encodes TIM-3, an immune checkpoint receptor on exhausted T cells and innate immune cells that promotes T cell dysfunction.
How may the rs10515746 variant relate to Long COVID or ME/CFS?
TIM-3 is co-expressed with PD-1 on exhausted T cells in COVID-19; variants may affect T cell exhaustion depth and the persistence of immune dysfunction in Long COVID.
Can a consumer DNA test detect the rs10515746 variant?
Many consumer DNA tests such as 23andMe, AncestryDNA, and MyHeritage genotype common SNPs. ChronicDNA analyses your raw DNA file and reports on variants studied in relation to chronic illness, immune function, and metabolism. This is not a diagnostic service — results are informational and educational only.
Find out if you carry the rs10515746 variant
Upload your DNA data from 23andMe, AncestryDNA, or MyHeritage and receive a personalised report covering >80 genes relevant to Long COVID and ME/CFS.
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References
The following publications were used in compiling the research context for HAVCR2 and its variants. This is not an exhaustive literature review.
- [1]PMID: 32296168
- [2]Nature Immunology
- [3]Cell