rs5963409
Variant in the CYBB gene (Cytochrome B-245 Beta Chain (NOX2/gp91phox))
rs5963409 is a single nucleotide polymorphism (SNP) in the CYBB gene, involved in NADPH oxidase / superoxide production. Variants at this position have been studied in relation to immune function, metabolism, and chronic illness.
This page is for educational and informational purposes only. Not a diagnostic tool. Always consult a qualified healthcare provider.
What is the rs5963409 variant?
rs5963409 is a SNP (single nucleotide polymorphism) in the CYBB (Cytochrome B-245 Beta Chain (NOX2/gp91phox)) gene. It belongs to the Oxidative Stress category and is part of the Oxidative Stress biological cluster. CYBB encodes NOX2 (gp91phox), the catalytic component of phagocyte NADPH oxidase that produces superoxide for killing pathogens.
Biological role and pathway
This variant sits within the CYBB gene, which is involved in the NADPH oxidase / superoxide production pathway. Genes within the Oxidative Stress cluster work together to maintain balanced function across interconnected biological systems.
Variants in genes within this pathway may influence an individual's predisposition to altered function — particularly under conditions of physiological stress such as viral infection or prolonged illness.
rs5963409 and Long COVID / ME-CFS research
NOX2-derived superoxide is part of the oxidative burst in macrophages and neutrophils; dysregulated NOX2 activity may contribute to oxidative stress and tissue damage in Long COVID.
This information is based on published research and does not constitute medical advice. See references below.
Parent gene: CYBB
rs5963409 is one of 1 known variant in the CYBB gene. To understand the full biological context of this variant, explore the parent gene page.
View CYBB gene page →Conditions studied in relation to rs5963409
Research into CYBB variants including rs5963409 has explored associations with the following conditions. These are areas of scientific investigation and do not imply causation.
Genetic insights from DNA data
Consumer DNA files from 23andMe, AncestryDNA, and MyHeritage contain raw SNP data. When you upload your file to ChronicDNA, the analysis engine checks your genotype against a curated panel of 80+ genes selected for their relevance to Long COVID, ME/CFS, and connected biological pathways - some of which may include CYBB and the rs5963409 variant.
The report is educational - it explains which variants you carry, what the research says about them, and how they fit into the biological pathways most relevant to chronic illness. Results are presented in plain English with appropriate scientific context, no medical jargon, no scare tactics. All results should be discussed with a qualified healthcare provider.
Frequently asked questions
What is the rs5963409 variant in the CYBB gene?
rs5963409 is a single nucleotide polymorphism (SNP) located in the CYBB (Cytochrome B-245 Beta Chain (NOX2/gp91phox)) gene, which is involved in NADPH oxidase / superoxide production. CYBB encodes NOX2 (gp91phox), the catalytic component of phagocyte NADPH oxidase that produces superoxide for killing pathogens.
How may the rs5963409 variant relate to Long COVID or ME/CFS?
NOX2-derived superoxide is part of the oxidative burst in macrophages and neutrophils; dysregulated NOX2 activity may contribute to oxidative stress and tissue damage in Long COVID.
Can a consumer DNA test detect the rs5963409 variant?
Many consumer DNA tests such as 23andMe, AncestryDNA, and MyHeritage genotype common SNPs. ChronicDNA analyses your raw DNA file and reports on variants studied in relation to chronic illness, immune function, and metabolism. This is not a diagnostic service — results are informational and educational only.
Find out if you carry the rs5963409 variant
Upload your DNA data from 23andMe, AncestryDNA, or MyHeritage and receive a personalised report covering >80 genes relevant to Long COVID and ME/CFS.
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References
The following publications were used in compiling the research context for CYBB and its variants. This is not an exhaustive literature review.
- [1]PMID: 34088393
- [2]Nature Genetics
- [3]Blood